High Protein Pumpkin Muffins (18g Protein Each)
These muffins taste like a soft slice of pumpkin bread, but each one packs enough protein to power you through the morning. They come together in one bowl and fill the kitchen with that cozy spice smell while they bake.

No dry, chalky protein-bar texture here. The pumpkin and blended cottage cheese keep them so moist you would never guess there is a serious protein punch tucked inside.
What Makes These Pumpkin Muffins So Good
Real pumpkin and warm spice lead the flavor, the way a good pumpkin muffin should. Cottage cheese melts into the batter and disappears, leaving a tender crumb and an extra 25 grams of protein spread across the batch.
The tops puff up slightly domed and golden, with just a little give when you press them. Because they are not heavy on sugar or oil, they do not leave you hungry an hour later, they hold steady all morning.
I keep a batch in the fridge and grab one on busy weekdays. They reheat in 30 seconds and taste fresh again, which is the real reason they stay in my rotation.
Ingredients

- 1 cup pumpkin puree: not pumpkin pie filling; the plain canned stuff works perfectly
- 1 cup full-fat cottage cheese: small curd blends the smoothest; do not drain it
- 3 scoops vanilla protein powder (about 90 g): whey, casein, or a plant-based blend all work; the muffins will be drier with a pure pea protein
- 2 large eggs: at room temperature if you have time, but cold works too
- 1/4 cup maple syrup: honey or brown sugar swap in easily
- 1/2 cup oat flour: store-bought or blend rolled oats until fine
- 2 tsp pumpkin pie spice: or 1 tsp cinnamon, 1/2 tsp ginger, 1/4 tsp nutmeg, and a pinch of cloves
- 1 tsp baking powder
- 1/4 tsp baking soda
- 1/4 tsp fine sea salt
Variations / Substitutions
- Gluten free: use certified gluten-free oat flour or swap in 1/2 cup almond flour plus 2 tbsp coconut flour for a grain-free version; the texture will be a little denser
- Dairy free: replace cottage cheese with 3/4 cup dairy-free yogurt and choose a plant-based protein powder; reduce maple syrup to 2 tbsp if your yogurt is sweetened
- No protein powder: sub 1/2 cup additional oat flour and 1/4 cup powdered peanut butter or almond flour; the protein content will drop so they are more of a classic pumpkin muffin
- Extra sweetness: add 2 tbsp mini chocolate chips or chopped pecans folded in at the end
- Warm it up: a batch of apple cinnamon protein muffins works the same way, just swap the pumpkin for unsweetened applesauce and use cinnamon in place of the spice blend
Fluffy Pumpkin Cottage Cheese Pancakes make a great breakfast to go with these muffins.
How To Make High Protein Pumpkin Muffins
Step 1: Blend the Wet Ingredients

Heat your oven to 350°F (175°C) and line 6 cups of a standard muffin tin with paper liners or grease them well. Place the 1 cup cottage cheese, 1 cup pumpkin puree, 2 eggs, and 1/4 cup maple syrup in a blender. Blend for about 30 seconds until the mixture is completely smooth and the cottage cheese curds are gone.
You want a velvety, pourable liquid with no white specks. If you do not have a blender, push the cottage cheese through a fine sieve with a spatula, then whisk everything together vigorously.
Step 2: Fold in the Dry Ingredients

Pour the wet mixture into a large mixing bowl. Sprinkle the 3 scoops protein powder, 1/2 cup oat flour, 2 tsp pumpkin pie spice, 1 tsp baking powder, 1/4 tsp baking soda, and 1/4 tsp salt over the top. Stir with a rubber spatula just until no dry pockets remain, about 15 to 20 strokes.
The batter will be thick but should still drop easily from the spatula. Overmixing makes protein powder turn gummy, so stop as soon as the flour streaks disappear.
Step 3: Bake the Muffins

Divide the batter evenly among the 6 prepared muffin cups, filling each one nearly to the top. The batter will not rise a lot so do not worry about domed tops overflowing. Slide the pan into the oven and bake for 20 to 22 minutes.
They are done when the tops spring back lightly to the touch and a toothpick inserted in the center comes out clean or with a few moist crumbs. Edges will have pulled slightly away from the pan.
Step 4: Cool and Pull One Apart

Let the muffins rest in the pan for 5 minutes, then transfer them to a wire rack. Pull one open while it is still warm and watch the steam drift up from the soft, spiced crumb. They will finish setting up as they cool for another 10 minutes.
A Few Notes Before You Start
- Protein powder brands absorb liquid differently. If your batter looks very dry and thick, add a tablespoon of milk or water at a time until it is scoopable but not runny.
- Silicone muffin molds release these beautifully with no sticking. If you use paper liners, a light spritz of oil inside each one helps the muffins peel clean.
- The most common mistake is overbaking. At the 20-minute mark, check them even if your oven runs cool. Protein baked goods go from moist to dry fast.
Keeping Leftover Muffins Fresh
- Refrigerate: Store in an airtight container in the fridge for up to 5 days. They stay moist and the protein holds the texture well.
- Reheating: A quick 30-second zap in the microwave brings back that just-baked softness. You can also split one and toast it until the edges get a little crisp.
What To Serve With High Protein Pumpkin Muffins
These are substantial on their own, but a swipe of salted almond butter plays off the sweet spice beautifully. If you want a bigger breakfast, set a muffin beside a bowl of plain Greek yogurt with a drizzle of honey. The tangy yogurt and soft muffin make a satisfying contrast.
Frequently Asked Questions
Can I use fresh pumpkin puree instead of canned?
Yes. Roast and puree your own pumpkin until it is thick and not watery. Blot it with paper towels if it seems loose so the batter does not thin out.
My protein powder is unflavored. Will that work?
It will bake fine but the muffins will need more sweetness. Add an extra tablespoon of maple syrup and bump the spice up by half a teaspoon so the flavor stays full.
Can I skip the cottage cheese?
You can, but the crumb won’t be as tender. Swap in an equal amount of full-fat Greek yogurt and expect the muffins to dome a little less.
Can I freeze these muffins?
Absolutely. Wrap each cooled muffin in plastic and freeze for up to 3 months. Thaw overnight in the fridge or microwave straight from frozen for about a minute.

High Protein Pumpkin Muffins Recipe
Ingredients
Method
- Heat oven to 350°F (175°C) and line 6 muffin cups. Blend cottage cheese, pumpkin, eggs, and maple syrup until completely smooth.
- Pour into a bowl and fold in protein powder, oat flour, pumpkin pie spice, baking powder, baking soda, and salt until just combined.
- Divide batter among the muffin cups and bake for 20 to 22 minutes, until a toothpick comes out clean.
- Cool in the pan 5 minutes, then move to a rack. Serve warm or at room temperature.
